Dataanalysis
From Genome Technology Core (GTC) wiki - Sequencing and Microarray
| Program | Description | Provider | Platform | ||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Array Designer | Tool assisting in primer design for microarray construction | Premier Biosoft International | JAVA | ||||||||||||||||||||||||||||||||||||||||||||
| ArrayMiner | Set of analysis tools using advanced algorithms to reveal the true structure of gene expression data | Optimal Design, Sprl. | Windows/MacOS | ||||||||||||||||||||||||||||||||||||||||||||
| ArrayViewer | Identification of statistically significant hybridization signals | National Human Genome Research Institute | JAVA | BAGEL | Bayesian Analysis of Gene Expression Levels: a program for the statistical analysis of spotted microarray data. | University of Connecticut | MacOS, Windows, Linux | BAMarray | Bayesian Analysis of Variance for Microarrays - detect differentially expressed genes from multigroup microarray data | Case University | Windows, Linux | BASE | Microarray database and analysis platform | Lund University | Web | Cluster 3.0 | An enhanced version of Mike Eisen's Cluster | University of Tokyo, Japan | UNIX, Linux, MacOS, Windows | DNA arrays analysis tools | Hierarchical clustering, Self Organizing Maps and more | Spanish National Cancer Center, Bioinformatics Unit | Web | Expression Profiler | Analysis & clustering of gene expression data | European Bioinformatics Institute (EBI) | Web | GEDA | Gene expression data analysis and simulation tools, offering a variety of options for processing and analyzing results. | University of Pittsburgh and UPMC | Web | GenMAPP | Tools for visualizing data from gene expression experiments in the context of biological pathways. | Conklin lab; Gladstone Institute & the UCSF | Windows | GeneX | Gene Expression Database : integrated toolset for data analysis and comparison | National Center for Genome Resources | Windows, Linux, SunOS/Solaris | TIGR MultiExperiment Viewer | Analysis and Visualization of Microarray Data | TIGR | JAVA | TreeArrange and Treeps | Software for displaying and manipulating hierarchical clustered data | University of Waterloo, Canada | Linux, Unix, Windows |
