Difference between revisions of "SequencingQC"
From Genome Technology Core (GTC) wiki - Sequencing and Microarray
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Note: We do not remove the reads that are suppose to be filtered by the solexa pipeline in version 1.4. However, reads suppose to be filtered are marked using a binary system of 1 = Good/Not Filtered and 0 = Bad/Filtered within the read ID. This information is in the quality score/FASTQ files. | Note: We do not remove the reads that are suppose to be filtered by the solexa pipeline in version 1.4. However, reads suppose to be filtered are marked using a binary system of 1 = Good/Not Filtered and 0 = Bad/Filtered within the read ID. This information is in the quality score/FASTQ files. | ||
| − | == '''''Sequencing Quality Control Based On FASTQ (Basecalls and quality scores)''''' == | + | == '''''Sequencing Quality Control Based On FASTQ (Basecalls and quality scores)''''' || '''''[[ELANDQC|Go to Sequencing Quality Control Based On ELAND Alignments]]''''' == |
| − | + | [[Image:FASTQ_QC.jpg]] | |
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Latest revision as of 12:14, 10 November 2011
Note: We do not remove the reads that are suppose to be filtered by the solexa pipeline in version 1.4. However, reads suppose to be filtered are marked using a binary system of 1 = Good/Not Filtered and 0 = Bad/Filtered within the read ID. This information is in the quality score/FASTQ files.
Sequencing Quality Control Based On FASTQ (Basecalls and quality scores) || Go to Sequencing Quality Control Based On ELAND Alignments
