Dataanalysis - Revision history

Sgupta at 19:10, 2 November 2007

2007-11-02T19:10:00Z

Sgupta at 19:01, 2 November 2007

2007-11-02T19:01:30Z

Sgupta at 19:00, 2 November 2007

2007-11-02T19:00:44Z

New page

{| border="1"
|+ Free Software from other sources
! Program !! Description !! Provider !! Platform
|-
! Array Designer
| Tool assisting in primer design for microarray construction || Premier Biosoft International || JAVA
|-
! ArrayMiner
|Set of analysis tools using advanced algorithms to reveal the true structure of gene expression data
|Optimal Design, Sprl.
|Windows/MacOS
|-
! ArrayViewer
|Identification of statistically significant hybridization signals
|National Human Genome Research Institute
|JAVA
! BAGEL
|Bayesian Analysis of Gene Expression Levels: a program for the statistical analysis of spotted microarray data.
|University of Connecticut
|MacOS, Windows, Linux
! BAMarray
|Bayesian Analysis of Variance for Microarrays - detect differentially expressed genes from multigroup microarray data
|Case University
|Windows, Linux
! BASE
|Microarray database and analysis platform
|Lund University
|Web
! Cluster 3.0
|An enhanced version of Mike Eisen's Cluster
|University of Tokyo, Japan
|UNIX, Linux, MacOS, Windows
! DNA arrays analysis tools
|Hierarchical clustering, Self Organizing Maps and more
|Spanish National Cancer Center, Bioinformatics Unit
|Web
! Expression Profiler
|Analysis & clustering of gene expression data
|European Bioinformatics Institute (EBI)
|Web
!GEDA
|Gene expression data analysis and simulation tools, offering a variety of options for processing and analyzing results.
|University of Pittsburgh and UPMC
|Web
! GenMAPP
|Tools for visualizing data from gene expression experiments in the context of biological pathways.
|Conklin lab; Gladstone Institute & the UCSF
|Windows
!GeneX
|Gene Expression Database : integrated toolset for data analysis and comparison
|National Center for Genome Resources
|Windows, Linux, SunOS/Solaris
! TIGR MultiExperiment Viewer
|Analysis and Visualization of Microarray Data
|TIGR
|JAVA
! TreeArrange and Treeps
|Software for displaying and manipulating hierarchical clustered data
|University of Waterloo, Canada
|Linux, Unix, Windows
|}

← Older revision		Revision as of 19:10, 2 November 2007
Line 1:		Line 1:
		+	{\| border="1"
		+	\|+ MIT Software
		+	! Program !! Description !! Platform
		+	\|-
		+	! GSEA
		+	\| Determines if a given set of genes shows differences between two biological states \|\| JAVA
		+	\|-
		+	! GeneCluster
		+	\|Self-organizing maps
		+	\|JAVA, Windows NT
		+	\|-
		+	! Connectivity Map
		+	\| Uses pattern-matching algorithms to enable discovery of functional connections between drugs, genes, and diseases
		+	\|Web
		+	\|-
		+	! GeneCruiser
		+	\| Annotation tool for Affymetrix probes
		+	\|Web
		+	\|}
		+
	{\| border="1"		{\| border="1"
	\|+ Free Software from other sources		\|+ Free Software from other sources

@@ Line 1: / Line 1: @@
 {| border="1"
 |+ Free Software from other sources
@@ Line 16: / Line 15: @@
 |National Human Genome Research Institute
 |JAVA
 ! BAGEL
 |Bayesian Analysis of Gene Expression Levels: a program for the statistical analysis of spotted microarray data.
 |University of Connecticut
 |MacOS, Windows, Linux
 ! BAMarray
 |Bayesian Analysis of Variance for Microarrays - detect differentially expressed genes from multigroup microarray data
 |Case University
 |Windows, Linux
 ! BASE
 |Microarray database and analysis platform
 |Lund University
 |Web
 ! Cluster 3.0
 |An enhanced version of Mike Eisen's Cluster
 |University of Tokyo, Japan
 |UNIX, Linux, MacOS, Windows
 ! DNA arrays analysis tools
 |Hierarchical clustering, Self Organizing Maps and more
 |Spanish National Cancer Center, Bioinformatics Unit
 |Web
 ! Expression Profiler
 |Analysis & clustering of gene expression data
 |European Bioinformatics Institute (EBI)
 |Web
 !GEDA
 |Gene expression data analysis and simulation tools, offering a variety of options for processing and analyzing results.
 |University of Pittsburgh and UPMC
 |Web
 ! GenMAPP
 |Tools for visualizing data from gene expression experiments in the context of biological pathways.
 |Conklin lab; Gladstone Institute & the UCSF
 |Windows
 !GeneX
 |Gene Expression Database : integrated toolset for data analysis and comparison
 |National Center for Genome Resources
 |Windows, Linux, SunOS/Solaris
 ! TIGR MultiExperiment Viewer
 |Analysis and Visualization of Microarray Data
 |TIGR
 |JAVA
 ! TreeArrange and Treeps
 |Software for displaying and manipulating hierarchical clustered data